The St. Stephen's Course in Orthodox Theology - a distance education-based, non-degree program. Aimed at introducing practicing and future church workers to the richness of Orthodox theology. Reading courses are mentored by mail, while local clergy provide auxiliary support and praxis for the student. Three one week courses are required at the Residency Program for St. Stephen's students. Graduates will receive the St. Stephen's Diploma. It has been called "a school without walls" by Metropolitan Maximos of the Metropolis of Pittsburgh.

The Residency Program - a residency-based, intensive program, aimed at practical issues within the theological training received by seminarians and St. Stephen's students. The Residency Program provides face-to-face training for recent and soon-to-be candidates for ordination. This is similar to attending an Orthodox Seminary for one week.

The Masters Degree in Applied Orthodox Theology - a formal degree program in cooperation with the St. John of Damascus School of Theology of the University of Balamand. Leads to a Master of Arts in Applied Orthodox Theology, which is accredited by the Government of Lebanon, and is awarded by the Univeristy of Balamand. Requires the St. Stephen's Diploma, the completion of a Masters Thesis, and one additional pastoral project. A new concentration in Youth Ministry is now being offered.

The Doctor of Ministry Program - an intensive program conducted in academic partnership with Pittsburgh Theological Seminary. Available to those who have acquired a Master of Divinity (M. Div.) degree and have served in a full time ministry for at least three years following graduation from seminary. This program leads to an accredited Doctor of Ministry (D. Min.) degree.

The Clergy Symposium - a biennial conference for all clergy of the Archdiocese. Provides a forum for both theory and praxis in the ministry of the priesthood.